Publications

For the full list, see Google Scholar.

2026

• An overexpression platform reveals the functional diversity of human KRAB-Zinc Finger Proteins in maintaining cellular homeostasis
  Forey R, Raclot C, Dorschel A, Archambeau J, Planet E, Bompadre O, Offner S, Matsushima W, van der Goot FG, Trono D
  bioRxiv 2026.04.20.718945 (2026)
• Tissue-specific restriction of transposon-derived regulatory elements safeguards cell-type identity
  Milovanović D, Duc J, Matsushima W, Hamelin R, Planet E, Offner S, Rosspopoff O, Trono D
  Cell Reports 45(1): 116817 (2026)

2025

• Zinc-finger proteins with a co-opted capsid domain anchor nucleosomes over transposon sequences
  Matsushima W, Duc J, Sheppard S, Pulver C, Grun D, Offner S, Raclot C, Planet E, Trono D
  bioRxiv 2025.03.03.638093 (2025)

2024

• Ancestral genome reconstruction enhances transposable element annotation by identifying degenerate integrants
  Matsushima W, Planet E, Trono D
  Cell Genomics 4(2): 100497 (2024)

2020

• Alterations in sperm long RNA contribute to the epigenetic inheritance of the effects of postnatal trauma
  Gapp K, van Steenwyk G, Germain PL, Matsushima W, Rudolph KLM, Manuella F, Roszkowski M, Vernaz G, Ghosh T, Pelczar P, Mansuy IM, Miska EA
  Molecular Psychiatry 25(9): 2162–2174 (2020)

2019

• Sequencing cell-type-specific transcriptomes with SLAM-ITseq
  Matsushima W, Herzog VA, Neumann T, Gapp K, Zuber J, Ameres SL, Miska EA
  Nature Protocols 14(8): 2261–2278 (2019)
• Mature sperm small-RNA profile in the sparrow: implications for transgenerational effects of age on fitness
  Matsushima W, Brink K, Schroeder J, Miska EA, Gapp K
  Environmental Epigenetics 5(2): dvz007 (2019)

2018

• SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting
  Matsushima W, Herzog VA, Neumann T, Gapp K, Zuber J, Ameres SL, Miska EA
  Development 145(13) (2018)